Background Image
Table of Contents Table of Contents
Previous Page  8 / 32 Next Page
Show Menu
Previous Page 8 / 32 Next Page
Page Background

International Journal of Human Nutrition and Functional Medicine


2014 Final PDF

4. Fujita, H., Y. Eishi, I. Ishige, K. Saitoh, T. Takizawa, T. Arima, and M. Koike. 2002. Quantitative analysis of bacterial DNA from



Bacteroides vulgatus

, and

Escherichia coli

in tissue samples from patients with inflammatory bowel


J. Gastroenterol

. 37:509–516.

5. He, Q., J.-P. Wang, M. Osato, and L.B. Lachman. 2002. Real-time quantitative PCR for detection of

Helicobacter pylori


J. Clin.


. 40:3720–3728.

6. Kimura, H. M. Morita, Y. Yabuta, K. Kuzushima, K. Kato, S. Kojima, T. Matsuyama, and T. Morishima. 1999. Quantitative

analysis of Epstein–Barr virus load by using a real-time PCR assay.

J Clin Microbiol

. 37:132–136.

7. Laurendeau, I., M. Bahuau, N. Vodovar, C. Larramendy, M. Olivi, I. Bieche, M. Vidaud, and D. Vidaud. 1999. TaqMan PCR-

based gene dosage assay for predictive testing in individuals from a cancer family with INK4 locus haploinsufficiency.



. 45:982–986.

8. Lewin, S.R., M. Vesanen, L. Kostrikis, A. Hurley, M. Duran, L. Zhang, D.D. Ho, and M. Markowitz. 1999. Use of real-time PCR

and molecular beacons to detect virus replication in human immunodeficiency virus type 1- infected individuals on prolonged

effective antiretroviral therapy.

J. Virol

. 73:6099–6103.

9. Malinen, E., A. Kassinen, T. Rinttilä, and A. Palva. 2003. Comparison of real-time PCR with SYBR Green I or 5


assays and dot-blot hybridization with rDNA-targeted oligonucleotide probes in quantification of selected faecal bacteria.


149, 269–277.

10. Martell, M., J. Gomez, J.I. Esteban, S. Sauleda, J. Quer, B. Cabot, R. Esteban, and J. Guardia. 1999. High-throughput real-time

reverse transcription-PCR quantitation of hepatitis C virus RNA.

J. Clin. Microbiol

. 37: 327–332.

11. Mensink, E., A. van de Locht, A. Schattenberg, E. Linders, N. Schaap, A. Geurts van Kessel, and T. De Witte. 1998.

Quantitation of minimal residual disease in Philadelphia chromosome positive chronic myeloid leukemia using real-time

quantitative RT-PCR.

Br. J. Haematol

. 102:768–774.

12. Oberst, R.D., M.P. Hays, L.K. Bohra, R.K. Phebus, C.T. Yamashiro, C. Paszko-Kolva, S. J. Flood, J.M. Sargeant, and J.R.

Gillespie. 1998. PCR-based DNA amplification and presumptive detection of

Escherichia coli

O157:H7 with an internal

fluorogenic probe and the 5


nuclease (TaqMan) assay.

Appl. Environ. Microbiol.


13. Pahl, A., U. Kuhlbrandt, K. Brune, M. Rollinghoff, and A. Gessner. 1999. Quantitative detection of

Borrelia burgdorferi

by real-

time PCR.

J. Clin. Microbiol

. 37:1958–1963.

14. Pirnay, J.P., D. De Vos, L. Duinslaeger, P. Reper, C. Vandenvelde, P. Cornelis, and A. Vanderkelen. 2000. Quantitation of

Pseudomonas aeruginosa

in wound biopsy samples: from bacterial culture to rapid ‘real-time’ polymerase chain reaction.




15. Requena, T., J. Burton, T. Matsuki, K. Munro, M.A. Simon, R. Tanaka, K. Watanabe, and G.W. Tannock. 2002. Identification,

detection, and enumeration of human


species by PCR targeting the transaldolase gene.

Appl. Environ.


. 68:2420–2427.

16. Rinttilä, T., A. Kassinen, E. Malinen, L. Krogius, and A. Palva. 2004. Development of an extensive set of 16S rDNA-targeted

primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR.

J Appl. Microbiol



17. Rinttilä, T., A. Lyra, L. Krogius-Kurikka, and A. Palva. 2011. Real-time PCR analysis of enteric pathogens from fecal samples or

irritable bowel syndrome subjects.

Gut Pathogens


18. Tajima, K., R.I. Aminov, T. Nagamine, H. Matsui, M. Nakamura, and Y. Benno. 2001. Diet-dependent shifts in the bacterial

population of the rumen revealed with real-time PCR.

Appl. Environ. Microbiol

. 67:2766–2774.

19. Tenover, F.C., S. Novak-Weekley, C.W. Woods, L.R. Peterson, T. Davis, P. Schreckenberger, F.C. Fang, A. Dascal, D.N.

Gerding, J.H. Nomura, R.V. Goering, T. Akerlund, A. S. Weissfeld, E. J. Baron, E. Wong, E. M. Marlowe, J. Whitmore, and D.

H. Persing. 2010. Impact of strain type on detection of toxigenic

Clostridium difficile

: comparison of molecular diagnostic and

enzyme immunoassay approaches.

J Clin Microbiol

. 48:3719-3724.

20. Von Ahsen, N., E. Schutz, V.W. Armstrong, and M. Oellerich. 1999. Rapid detection of prothrombotic mutations of prothrombin

(G20210A), factor V (G1691A) and methylenetetrahydrofolate reductase (C677T) by real-time fluorescence PCR with the


Clin Chem

. 45:694–696.